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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ATAC-seq
16
snATAC-seq
2
Capture-C
1
Hi-C
Assay category
96
DNA accessibility
Transcription
1
3D chromatin structure
Date released
75
August, 2021
11
May, 2023
10
April, 2020
3
February, 2023
Available data
68
bed narrowPeak
64
xls
5
bigWig
3
bed bedgraph
3
txt
2
bed bed3+
1
hic
Organism
98
Homo sapiens
Biosample type
92
tissue
7
in vitro differentiated cells
Organ
82
kidney
10
lung
4
connective tissue
Project
89
AMP
10
LungMap
Genome assembly (visualization)
75
GRCh38
8
hg19
Lab
2436
AMP-T2D consortium
228
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
99 results
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ATAC-seq
snATAC-seq
Capture-C
Hi-C
tissue
kidney
75
6
1
lung
10
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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