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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
snATAC-seq
5
STARR-seq
1
ATAC-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
Transcription
18
DNA binding
11
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
25
August, 2021
10
April, 2020
1
March, 2019
Available data
14
bed narrowPeak
14
bigWig
2
bedpe bed3+
hic
1
bedpe
1
vcf
Organism
35
Homo sapiens
Biosample type
24
cell line
12
tissue
Organ
21
liver
10
lung
2
kidney
2
pancreas
Project
26
AMP
10
LungMap
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
2420
AMP-T2D consortium
Kyle Gaulton, UCSD
144
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
26
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
lab.title!
Kyle Gaulton, UCSD
files.file_type!
hic
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
snATAC-seq
STARR-seq
ATAC-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
2
1
HEK293T
2
Synthesized DNA
1
tissue
lung
10
islet of Langerhans
1
1
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