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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
10
snATAC-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
Transcription
15
DNA binding
11
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
23
August, 2021
10
April, 2020
2
March, 2019
Available data
11
bed narrowPeak
11
bigWig
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
34
Homo sapiens
Biosample type
22
cell line
13
tissue
Organ
19
liver
10
lung
3
pancreas
2
kidney
Project
25
AMP
10
LungMap
Genome assembly (visualization)
14
hg19
1
GRCh38
Lab
1592
AMP-T2D consortium
147
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
82
Katalin Susztak, Upenn
25
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
histone
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
snATAC-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
15
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
lung
10
islet of Langerhans
2
1
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