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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
92
ChIP-seq
31
DNase-seq
10
RRBS
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
161
DNA accessibility
92
DNA binding
Transcription
11
DNA methylation
6
3D chromatin structure
Target of assay
65
histone
65
histone modification
34
narrow histone mark
31
broad histone mark
17
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
100
May, 2020
55
June, 2019
32
October, 2019
18
August, 2017
18
May, 2021
13
July, 2019
12
February, 2023
9
November, 2017
5
May, 2019
4
August, 2021
2
February, 2021
2
November, 2020
1
March, 2020
Available data
181
bam
152
bigWig
113
bed narrowPeak
87
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
26
fastq
16
tagAlign
12
tsv
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
271
Homo sapiens
Biosample type
1193
tissue
458
cell line
271
primary cell
204
in vitro differentiated cells
8
stem cell
Organ
144
epithelium
pancreas
35
vasculature
30
kidney
29
blood vessel
23
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
5
eye
Project
271
AMP
Genome assembly (visualization)
174
hg19
109
GRCh38
Lab
271
AMP-T2D consortium
141
Kyle Gaulton, UCSD
48
Klaus Kaestner, Upenn
1
ITG
0
Xin Sun, UCSD
Audit category:
42
inconsistent ontology term
1
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_slims!
Transcription
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
pancreas
BIOSAMPLE
ASSAY
271 results
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ATAC-seq
ChIP-seq
DNase-seq
RRBS
Hi-C
DNAme array
FAIRE-seq
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
2
1
skeletal muscle myoblast
15
2
1
monocyte
15
1
1
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