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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ATAC-seq
41
WGBS
31
snATAC-seq
3
Hi-C
Assay category
Transcription
80
DNA accessibility
41
DNA methylation
3
3D chromatin structure
Date released
101
May, 2022
February, 2021
10
April, 2020
7
August, 2020
3
October, 2022
3
September, 2020
Available data
101
zippedFastqFolder
10
bigWig
10
fastq
3
bedpe bed3+
3
cool
3
hic
Organism
123
Homo sapiens
Biosample type
114
primary cell
10
tissue
Organ
93
epithelium
93
pancreas
10
lung
Project
114
HPAP
10
LungMap
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
2317
AMP-T2D consortium
228
Kyle Gaulton, UCSD
114
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
3
audit script error
assay_slims!
Transcription
lab.title!
Struan F.A. Grant, CHOP
month_released!
February, 2021
BIOSAMPLE
ASSAY
124 results
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ATAC-seq
WGBS
snATAC-seq
Hi-C
primary cell
pancreatic alpha cell
29
25
1
pancreatic beta cell
16
16
1
Langerhans cell
21
pancreatic acinar cell
4
1
tissue
lung
10
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