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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
34
ATAC-seq
28
snATAC-seq
17
pCHi-C
Assay category
154
DNA binding
Transcription
62
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
176
May, 2021
18
May, 2022
16
January, 2021
13
February, 2023
10
April, 2020
Available data
132
bed narrowPeak
122
bigWig
102
bam
84
tagAlign
18
fastq
Organism
232
Homo sapiens
Biosample type
141
primary cell
50
tissue
42
in vitro differentiated cells
cell line
Organ
39
pancreas
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
130
T1D
93
AMP
10
LungMap
Genome assembly (visualization)
140
hg19
84
GRCh38
Lab
1925
AMP-T2D consortium
223
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
biosample_type!
cell line
BIOSAMPLE
ASSAY
233 results
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ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
primary cell
monocyte
84
1
CD8-positive, alpha-beta T cell
33
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
tissue
islet of Langerhans
29
6
lung
10
pancreas
4
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
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