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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
snATAC-seq
47
WGBS
41
ATAC-seq
3
Hi-C
Assay category
Transcription
99
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
101
May, 2022
33
February, 2021
10
April, 2020
3
October, 2022
2
March, 2019
Available data
101
zippedFastqFolder
44
fastq
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
1
bam
1
bed broadPeak
Organism
148
Homo sapiens
Biosample type
137
primary cell
12
tissue
Organ
91
pancreas
89
epithelium
10
lung
Project
137
HPAP
10
LungMap
2
AMP
Genome assembly (visualization)
4
hg19
1
GRCh38
Lab
881
AMP-T2D consortium
137
Klaus Kaestner, Upenn
106
Kyle Gaulton, UCSD
82
Katalin Susztak, Upenn
14
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
Audit category:
30
audit script error
assay_slims!
Transcription
files.file_type!
bigWig
BIOSAMPLE
ASSAY
149 results
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snATAC-seq
WGBS
ATAC-seq
Hi-C
primary cell
pancreatic alpha cell
31
22
1
Langerhans cell
48
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
tissue
lung
10
islet of Langerhans
2
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