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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
snATAC-seq
51
ATAC-seq
41
WGBS
3
Hi-C
Assay category
Transcription
109
DNA accessibility
41
DNA methylation
3
3D chromatin structure
Date released
101
May, 2022
27
February, 2021
10
April, 2020
7
August, 2020
3
October, 2022
3
September, 2020
2
March, 2019
Available data
101
zippedFastqFolder
44
fastq
10
bigWig
tsv
3
bedpe bed3+
3
cool
3
hic
1
bam
1
bed broadPeak
Organism
152
Homo sapiens
Biosample type
141
primary cell
12
tissue
Organ
95
pancreas
93
epithelium
10
lung
Project
141
HPAP
10
LungMap
2
AMP
Genome assembly (visualization)
11
GRCh38
4
hg19
Lab
2386
AMP-T2D consortium
228
Kyle Gaulton, UCSD
141
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
assay_slims!
Transcription
files.file_type!
tsv
BIOSAMPLE
ASSAY
153 results
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snATAC-seq
ATAC-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
29
25
1
Langerhans cell
48
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
tissue
lung
10
islet of Langerhans
2
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