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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ATAC-seq
48
snATAC-seq
47
WGBS
3
Hi-C
Assay category
Transcription
97
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
101
May, 2022
33
February, 2021
7
August, 2020
3
October, 2022
3
September, 2020
Available data
101
zippedFastqFolder
43
fastq
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
147
Homo sapiens
Biosample type
147
primary cell
tissue
Organ
99
epithelium
99
pancreas
Project
147
HPAP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
171
AMP-T2D consortium
147
Klaus Kaestner, Upenn
104
Kyle Gaulton, UCSD
25
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
1
ITG
0
Mark McCarthy, Oxford
0
Xin Sun, UCSD
Audit category:
30
audit script error
assay_slims!
Transcription
files.file_type!
bam
biosample_type!
tissue
BIOSAMPLE
ASSAY
147 results
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ATAC-seq
snATAC-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
29
31
1
Langerhans cell
48
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
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