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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
snATAC-seq
48
ATAC-seq
47
WGBS
3
Hi-C
Assay category
Transcription
106
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
101
May, 2022
33
February, 2021
10
April, 2020
7
August, 2020
3
October, 2022
September, 2020
2
March, 2019
Available data
101
zippedFastqFolder
41
fastq
7
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
1
bam
1
bed broadPeak
Organism
155
Homo sapiens
Biosample type
144
primary cell
12
tissue
Organ
98
pancreas
96
epithelium
10
lung
Project
144
HPAP
10
LungMap
2
AMP
Genome assembly (visualization)
8
GRCh38
4
hg19
Lab
2436
AMP-T2D consortium
228
Kyle Gaulton, UCSD
144
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
assay_slims!
Transcription
month_released!
September, 2020
BIOSAMPLE
ASSAY
156 results
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snATAC-seq
ATAC-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
27
31
1
Langerhans cell
48
pancreatic beta cell
15
16
1
pancreatic acinar cell
4
1
tissue
lung
10
islet of Langerhans
2
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