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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
36
ATAC-seq
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
Transcription
36
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
176
May, 2021
18
May, 2022
16
February, 2023
2
March, 2019
Available data
132
bed narrowPeak
122
bigWig
103
bam
84
tagAlign
19
fastq
1
bed broadPeak
Organism
212
Homo sapiens
Biosample type
133
primary cell
42
in vitro differentiated cells
32
tissue
5
cell line
Organ
31
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
117
T1D
95
AMP
Genome assembly (visualization)
141
hg19
85
GRCh38
Lab
2434
AMP-T2D consortium
210
Kyle Gaulton, UCSD
99
Klaus Kaestner, Upenn
76
Katalin Susztak, Upenn
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
0
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
212 results
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ChIP-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
CD8-positive, alpha-beta T cell
33
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
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in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
31
thymus
1
cell line
EndoC_BH1
3
2
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