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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
34
ATAC-seq
20
snATAC-seq
17
total RNA-seq
9
single cell RNA-seq
1
pCHi-C
Assay category
54
DNA accessibility
37
DNA binding
26
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
49
May, 2021
24
May, 2022
19
April, 2020
18
February, 2023
8
January, 2021
Available data
24
bam
24
fastq
18
bed narrowPeak
6
txt
5
bigWig
Organism
117
Homo sapiens
Biosample type
239
primary cell
71
tissue
47
in vitro differentiated cells
5
cell line
Organ
51
pancreas
19
lung
1
thymus
Project
72
AMP
27
T1D
19
LungMap
Genome assembly (visualization)
23
hg19
Lab
2765
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
single cell RNA-seq
pCHi-C
tissue
islet of Langerhans
29
6
11
lung
10
9
pancreas
4
1
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
5
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