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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ATAC-seq
20
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
2
Capture-C
Assay category
35
DNA accessibility
29
Transcription
Date released
40
May, 2022
19
April, 2020
4
August, 2021
3
February, 2023
Available data
25
bigWig
24
bed narrowPeak
3
bed bedgraph
3
txt
2
bed bed3+
Organism
65
Homo sapiens
Biosample type
59
tissue
7
in vitro differentiated cells
Organ
40
liver
19
lung
4
connective tissue
Project
47
AMP
19
LungMap
Genome assembly (visualization)
27
hg19
Lab
3912
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
lab.title!
Bing Ren, UCSD
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
66 results
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ATAC-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
Capture-C
tissue
liver
20
20
lung
10
9
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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