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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
106
total RNA-seq
26
snATAC-seq
23
ATAC-seq
16
pCHi-C
9
single cell RNA-seq
Assay category
154
DNA binding
115
Transcription
49
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
234
May, 2021
41
May, 2020
24
May, 2022
February, 2023
19
April, 2020
16
January, 2021
Available data
216
bigWig
200
bam
132
bed narrowPeak
92
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
333
Homo sapiens
Biosample type
234
primary cell
53
tissue
47
in vitro differentiated cells
Organ
33
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
208
T1D
107
AMP
19
LungMap
Genome assembly (visualization)
234
hg19
176
GRCh38
Lab
3479
AMP-T2D consortium
315
Kyle Gaulton, UCSD
248
Klaus Kaestner, Upenn
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
Bing Ren, UCSD
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
4
Rohit N. Kulkarni, M.D., Ph.D.
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
lab.title!
Bing Ren, UCSD
Katalin Susztak, Upenn
audit.ERROR.category!
inconsistent ontology term
month_released!
February, 2023
BIOSAMPLE
ASSAY
334 results
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ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
pCHi-C
single cell RNA-seq
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 29 more…
tissue
islet of Langerhans
6
4
18
lung
10
9
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
5
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