Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ATAC-seq
49
total RNA-seq
20
single cell RNA-seq
16
snATAC-seq
2
Capture-C
1
Hi-C
Assay category
96
DNA accessibility
69
Transcription
1
3D chromatin structure
Date released
132
August, 2021
19
April, 2020
14
May, 2023
3
February, 2023
Available data
68
bed narrowPeak
64
xls
60
txt
5
bigWig
3
bed bedgraph
2
bed bed3+
1
hic
Organism
167
Homo sapiens
Biosample type
161
tissue
7
in vitro differentiated cells
Organ
142
kidney
19
lung
4
connective tissue
Project
149
AMP
19
LungMap
Genome assembly (visualization)
75
GRCh38
8
hg19
Lab
3912
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
lab.title!
Bing Ren, UCSD
Stephen Parker, UMich
BIOSAMPLE
ASSAY
168 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
Capture-C
Hi-C
tissue
kidney
75
49
11
6
1
lung
9
10
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
Download