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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
single cell RNA-seq
92
total RNA-seq
58
snATAC-seq
47
WGBS
40
ATAC-seq
3
Hi-C
Assay category
186
Transcription
98
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
56
September, 2020
45
February, 2021
19
April, 2020
3
October, 2022
1
March, 2019
Available data
160
fastq
153
zippedFastqFolder
6
tsv
3
bedpe bed3+
3
cool
3
hic
1
bam
1
bed broadPeak
Organism
333
Homo sapiens
Biosample type
314
primary cell
20
tissue
Organ
143
pancreas
142
epithelium
19
lung
Project
314
HPAP
19
LungMap
1
AMP
Genome assembly (visualization)
GRCh38
4
hg19
Lab
1094
AMP-T2D consortium
314
Klaus Kaestner, Upenn
163
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
30
audit script error
lab.title!
Bing Ren, UCSD
assembly!
GRCh38
BIOSAMPLE
ASSAY
334 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
WGBS
ATAC-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
22
1
pancreatic beta cell
11
16
13
1
exocrine cell
39
pancreatic acinar cell
4
1
tissue
lung
9
10
islet of Langerhans
1
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