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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
31
ATAC-seq
28
snATAC-seq
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
65
Transcription
59
DNA accessibility
Date released
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
19
April, 2020
16
January, 2021
2
March, 2019
Available data
70
bam
45
bigWig
45
tsv
25
fastq
18
bed narrowPeak
6
txt
1
bed broadPeak
Organism
128
Homo sapiens
Biosample type
71
tissue
53
primary cell
5
cell line
Organ
52
pancreas
19
lung
8
blood
8
bodily fluid
Project
84
T1D
26
AMP
19
LungMap
Genome assembly (visualization)
64
hg19
46
GRCh38
Lab
3748
AMP-T2D consortium
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
108
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
lab.title!
Bing Ren, UCSD
month_released!
May, 2021
BIOSAMPLE
ASSAY
129 results
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total RNA-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
11
31
6
lung
10
9
pancreas
4
primary cell
peripheral blood mononuclear cell
8
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
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cell line
EndoC_BH1
3
2
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