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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
single cell RNA-seq
92
total RNA-seq
57
snATAC-seq
51
ATAC-seq
47
WGBS
3
Hi-C
Assay category
186
Transcription
108
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
18
April, 2020
7
August, 2020
3
October, 2022
2
March, 2019
Available data
170
fastq
153
zippedFastqFolder
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
1
bam
1
bed broadPeak
Organism
344
Homo sapiens
Biosample type
324
primary cell
20
tissue
Organ
154
pancreas
152
epithelium
18
lung
Project
324
HPAP
18
LungMap
2
AMP
Genome assembly (visualization)
11
GRCh38
4
hg19
Lab
3902
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
Bing Ren, UCSD
18
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
344 results
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Clear Filters
single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
tissue
lung
9
9
islet of Langerhans
2
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