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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 154ChIP-seq
  • 115total RNA-seq
  • 34ATAC-seq
  • 28snATAC-seq
  • 17pCHi-C
  • 9single cell RNA-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
Assay category
  • 154DNA binding
  • 124Transcription
  • 62DNA accessibility
Target of assay
  • 134histone
  • 134histone modification
  • 74broad histone mark
  • 60narrow histone mark
  • 12transcription factor
  • 8control
  • 5RNA binding protein
Date released
  • 235May, 2021
  • 45May, 2020
  • 24May, 2022
  • 23February, 2023
  • 19April, 2020
  • 16January, 2021
Available data
  • 220bigWig
  • 204bam
  • 132bed narrowPeak
  • 96tsv
  • 84tagAlign
  • 24fastq
  • 6txt
  • 2bed bed3+
Organism
  • 361Homo sapiens
Biosample type
  • 239primary cell
  • 71tissue
  • 47in vitro differentiated cells
  • 5cell line
Organ
  • 56pancreas
  • 19lung
  • 8blood
  • 8bodily fluid
  • 5epithelium
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • 236T1D
  • 107AMP
  • 19LungMap
Genome assembly (visualization)
  • 238hg19
  • 180GRCh38
Lab
  • 3914AMP-T2D consortium
  • 343Kyle Gaulton, UCSD
  • 321Klaus Kaestner, Upenn
  • 128Katalin Susztak, Upenn
  • 40Karen Mohlke, UNC
  • 38Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 4Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 10inconsistent ontology term
BIOSAMPLE
ASSAY

362 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte84531
CD8-positive, alpha-beta T cell3341
peripheral blood mononuclear cell8
B cell21
naive B cel21
tissue
islet of Langerhans11296
lung109
pancreas14
thymus1
in vitro differentiated cells
embryonic stem cell3755
cell line
EndoC_BH132
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