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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
115
total RNA-seq
9
single cell RNA-seq
Assay category
154
DNA binding
124
Transcription
62
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
213
May, 2021
45
May, 2020
9
April, 2020
6
May, 2022
5
February, 2023
Available data
215
bigWig
186
bam
114
bed narrowPeak
96
tsv
84
tagAlign
6
fastq
6
txt
2
bed bed3+
Organism
278
Homo sapiens
Biosample type
215
primary cell
42
in vitro differentiated cells
21
tissue
Organ
12
pancreas
9
lung
Project
185
T1D
84
AMP
9
LungMap
Genome assembly (visualization)
215
hg19
180
GRCh38
Lab
3135
AMP-T2D consortium
269
Kyle Gaulton, UCSD
177
Klaus Kaestner, Upenn
60
Katalin Susztak, Upenn
47
KPMP
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
278 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 20 more…
in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
11
lung
9
pancreas
1
See all biosamples
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