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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
70
total RNA-seq
ATAC-seq
28
snATAC-seq
17
pCHi-C
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
79
Transcription
28
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
230
May, 2021
May, 2020
19
April, 2020
16
January, 2021
12
February, 2023
6
May, 2022
Available data
170
bigWig
141
bam
114
bed narrowPeak
84
tagAlign
51
tsv
6
fastq
6
txt
2
bed bed3+
Organism
282
Homo sapiens
Biosample type
194
primary cell
42
in vitro differentiated cells
42
tissue
5
cell line
Organ
22
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
180
T1D
84
AMP
19
LungMap
Genome assembly (visualization)
170
hg19
135
GRCh38
Lab
3373
AMP-T2D consortium
275
Klaus Kaestner, Upenn
264
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
month_released!
May, 2020
BIOSAMPLE
ASSAY
283 results
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ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
51
1
CD8-positive, alpha-beta T cell
33
2
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
in vitro differentiated cells
embryonic stem cell
37
5
tissue
lung
10
9
islet of Langerhans
11
6
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
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