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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
109
total RNA-seq
28
snATAC-seq
17
pCHi-C
ATAC-seq
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
118
Transcription
28
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
230
May, 2021
45
May, 2020
19
April, 2020
16
January, 2021
12
February, 2023
May, 2022
Available data
215
bigWig
180
bam
114
bed narrowPeak
96
tsv
84
tagAlign
2
bed bed3+
Organism
321
Homo sapiens
Biosample type
239
primary cell
42
in vitro differentiated cells
36
tissue
5
cell line
Organ
19
lung
16
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
225
T1D
78
AMP
19
LungMap
Genome assembly (visualization)
215
hg19
180
GRCh38
Lab
3567
AMP-T2D consortium
303
Kyle Gaulton, UCSD
180
Klaus Kaestner, Upenn
67
Katalin Susztak, Upenn
47
KPMP
37
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
5
inconsistent ontology term
assay_title!
ATAC-seq
month_released!
May, 2022
BIOSAMPLE
ASSAY
322 results
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ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
37
5
tissue
lung
10
9
islet of Langerhans
5
6
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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