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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
94
ChIP-seq
ATAC-seq
28
snATAC-seq
17
pCHi-C
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
124
Transcription
94
DNA binding
28
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
170
May, 2021
45
May, 2020
19
April, 2020
16
January, 2021
12
February, 2023
6
May, 2022
Available data
165
bigWig
146
bam
96
tsv
64
bed narrowPeak
44
tagAlign
6
fastq
6
txt
2
bed bed3+
Organism
267
Homo sapiens
Biosample type
189
primary cell
42
tissue
32
in vitro differentiated cells
5
cell line
Organ
22
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
185
T1D
64
AMP
19
LungMap
Genome assembly (visualization)
165
hg19
140
GRCh38
Lab
3132
AMP-T2D consortium
275
Klaus Kaestner, Upenn
249
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
35
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
5
inconsistent ontology term
assay_title!
ATAC-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
268 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
44
1
CD8-positive, alpha-beta T cell
4
23
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
lung
10
9
islet of Langerhans
11
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
27
cell line
EndoC_BH1
3
2
See all biosamples
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