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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
50
ChIP-seq
34
ATAC-seq
28
snATAC-seq
17
pCHi-C
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
HiChIP
Assay category
124
Transcription
62
DNA accessibility
50
DNA binding
Target of assay
50
histone
50
histone modification
30
broad histone mark
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
131
May, 2021
45
May, 2020
24
May, 2022
21
February, 2023
19
April, 2020
16
January, 2021
Available data
170
bigWig
164
bam
96
tsv
82
bed narrowPeak
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
255
Homo sapiens
Biosample type
145
primary cell
71
tissue
37
in vitro differentiated cells
3
cell line
Organ
51
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
150
T1D
87
AMP
19
LungMap
Genome assembly (visualization)
144
hg19
96
GRCh38
Lab
3295
AMP-T2D consortium
324
Klaus Kaestner, Upenn
237
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
36
Bing Ren, UCSD
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
assay_title!
HiChIP
files.file_type!
tagAlign
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
256 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
23
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
11
29
6
lung
10
9
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
27
5
cell line
EndoC_BH1
3
See all biosamples
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