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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
110
total RNA-seq
29
ATAC-seq
snATAC-seq
17
pCHi-C
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
119
Transcription
117
DNA binding
29
DNA accessibility
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
188
May, 2021
45
May, 2020
24
May, 2022
21
February, 2023
9
April, 2020
Available data
215
bigWig
204
bam
132
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
287
Homo sapiens
Biosample type
231
primary cell
51
tissue
in vitro differentiated cells
5
cell line
Organ
41
pancreas
9
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
218
T1D
60
AMP
9
LungMap
Genome assembly (visualization)
233
hg19
180
GRCh38
Lab
3570
AMP-T2D consortium
278
Kyle Gaulton, UCSD
276
Klaus Kaestner, Upenn
136
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
assay_title!
snATAC-seq
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
287 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
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tissue
islet of Langerhans
11
29
lung
9
pancreas
1
thymus
1
cell line
EndoC_BH1
3
2
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