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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
33
ChIP-seq
23
ATAC-seq
Assay category
98
Transcription
33
DNA binding
23
DNA accessibility
Target of assay
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
3
control
Date released
91
May, 2021
45
May, 2020
18
May, 2022
Available data
220
bigWig
198
bam
132
bed narrowPeak
96
tsv
tagAlign
18
fastq
2
bed bed3+
Organism
154
Homo sapiens
Biosample type
131
primary cell
18
tissue
5
in vitro differentiated cells
Organ
18
pancreas
Project
96
T1D
58
AMP
Genome assembly (visualization)
154
hg19
96
GRCh38
Lab
2771
AMP-T2D consortium
154
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
3
Klaus Kaestner, Upenn
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
0
Xin Sun, UCSD
Audit category:
4
inconsistent ontology term
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
154 results
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total RNA-seq
ChIP-seq
ATAC-seq
primary cell
monocyte
53
CD8-positive, alpha-beta T cell
4
33
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 20 more…
tissue
islet of Langerhans
18
in vitro differentiated cells
embryonic stem cell
5
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