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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
53
ChIP-seq
23
ATAC-seq
Assay category
98
Transcription
53
DNA binding
23
DNA accessibility
Target of assay
114
histone
114
histone modification
broad histone mark
50
narrow histone mark
3
control
Date released
111
May, 2021
45
May, 2020
18
May, 2022
Available data
156
bigWig
154
bam
96
tsv
68
bed narrowPeak
40
tagAlign
18
fastq
2
bed bed3+
Organism
174
Homo sapiens
Biosample type
151
primary cell
18
tissue
5
in vitro differentiated cells
Organ
18
pancreas
Project
136
T1D
38
AMP
Genome assembly (visualization)
174
hg19
136
GRCh38
Lab
2619
AMP-T2D consortium
174
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
3
Klaus Kaestner, Upenn
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
0
Xin Sun, UCSD
Audit category:
4
inconsistent ontology term
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
174 results
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total RNA-seq
ChIP-seq
ATAC-seq
primary cell
monocyte
53
40
CD8-positive, alpha-beta T cell
4
13
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 20 more…
tissue
islet of Langerhans
18
in vitro differentiated cells
embryonic stem cell
5
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