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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
111
total RNA-seq
34
ATAC-seq
28
snATAC-seq
pCHi-C
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
120
Transcription
62
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
218
May, 2021
41
May, 2020
24
May, 2022
23
February, 2023
19
April, 2020
16
January, 2021
Available data
216
bigWig
200
bam
132
bed narrowPeak
92
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
340
Homo sapiens
Biosample type
219
primary cell
70
tissue
47
in vitro differentiated cells
5
cell line
Organ
51
pancreas
19
lung
8
blood
8
bodily fluid
Project
215
T1D
107
AMP
19
LungMap
Genome assembly (visualization)
234
hg19
176
GRCh38
Lab
3540
AMP-T2D consortium
324
Klaus Kaestner, Upenn
322
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
37
Bing Ren, UCSD
19
Xin Sun, UCSD
6
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
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audit.ERROR.category!
inconsistent ontology term
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
341 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
peripheral blood mononuclear cell
8
B cell
2
T follicular helper cell
2
+ See 19 more…
tissue
islet of Langerhans
11
29
6
lung
10
9
pancreas
1
4
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC_BH1
3
2
See all biosamples
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