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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
94
ChIP-seq
34
ATAC-seq
28
snATAC-seq
17
pCHi-C
9
single cell RNA-seq
Assay category
124
Transcription
94
DNA binding
62
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
175
May, 2021
45
May, 2020
24
May, 2022
19
April, 2020
18
February, 2023
16
January, 2021
Available data
170
bigWig
164
bam
96
tsv
82
bed narrowPeak
44
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
296
Homo sapiens
Biosample type
189
primary cell
71
tissue
37
in vitro differentiated cells
cell line
Organ
51
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
191
T1D
87
AMP
19
LungMap
Genome assembly (visualization)
188
hg19
140
GRCh38
Lab
2877
AMP-T2D consortium
324
Klaus Kaestner, Upenn
278
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
biosample_type!
cell line
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
297 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
single cell RNA-seq
primary cell
monocyte
53
44
1
CD8-positive, alpha-beta T cell
4
23
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
11
29
6
lung
10
9
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
27
5
See all biosamples
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