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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
28
snATAC-seq
17
pCHi-C
16
ATAC-seq
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
124
Transcription
44
DNA accessibility
DNA binding
Date released
81
May, 2021
45
May, 2020
23
February, 2023
19
April, 2020
16
January, 2021
6
May, 2022
Available data
120
bam
103
bigWig
96
tsv
24
fastq
bed narrowPeak
6
txt
2
bed bed3+
Organism
189
Homo sapiens
Biosample type
122
primary cell
53
tissue
10
in vitro differentiated cells
5
cell line
Organ
33
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
152
T1D
19
AMP
19
LungMap
Genome assembly (visualization)
103
hg19
96
GRCh38
Lab
1867
AMP-T2D consortium
324
Klaus Kaestner, Upenn
171
Kyle Gaulton, UCSD
78
Katalin Susztak, Upenn
47
KPMP
20
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
files.file_type!
bed narrowPeak
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
190 results
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total RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
4
1
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
11
6
11
lung
10
9
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
5
cell line
EndoC_BH1
3
2
See all biosamples
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