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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
103
total RNA-seq
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
103
Transcription
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
228
May, 2021
45
May, 2020
5
February, 2023
Available data
215
bigWig
180
bam
114
bed narrowPeak
96
tsv
84
tagAlign
2
bed bed3+
Organism
278
Homo sapiens
Biosample type
231
primary cell
42
in vitro differentiated cells
tissue
5
cell line
Organ
1
bone element
1
bone marrow
1
connective tissue
Project
201
T1D
77
AMP
Genome assembly (visualization)
215
hg19
180
GRCh38
Lab
452
AMP-T2D consortium
278
Kyle Gaulton, UCSD
95
Klaus Kaestner, Upenn
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
0
Xin Sun, UCSD
Audit category:
5
inconsistent ontology term
files.file_type!
fastq
assay_slims!
DNA accessibility
biosample_type!
tissue
BIOSAMPLE
ASSAY
278 results
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ChIP-seq
total RNA-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
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in vitro differentiated cells
embryonic stem cell
37
5
cell line
EndoC_BH1
3
2
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