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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
64
total RNA-seq
28
snATAC-seq
17
pCHi-C
16
ATAC-seq
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
73
Transcription
44
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
May, 2020
23
February, 2023
19
April, 2020
16
January, 2021
Available data
175
bigWig
159
bam
132
bed narrowPeak
84
tagAlign
51
tsv
fastq
6
txt
2
bed bed3+
Organism
292
Homo sapiens
Biosample type
194
primary cell
47
in vitro differentiated cells
47
tissue
5
cell line
Organ
27
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
191
T1D
83
AMP
19
LungMap
Genome assembly (visualization)
175
hg19
135
GRCh38
Lab
2453
AMP-T2D consortium
274
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
month_released!
May, 2020
BIOSAMPLE
ASSAY
293 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
51
1
CD8-positive, alpha-beta T cell
33
2
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
islet of Langerhans
5
6
11
lung
10
9
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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