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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
70
total RNA-seq
34
ATAC-seq
28
snATAC-seq
17
pCHi-C
10
MeRIP-seq
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
79
Transcription
62
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
13
control
12
transcription factor
5
RNA binding protein
5
nucleotide modification
Date released
235
May, 2021
May, 2020
24
May, 2022
23
February, 2023
19
April, 2020
16
January, 2021
10
November, 2020
Available data
175
bigWig
159
bam
132
bed narrowPeak
84
tagAlign
51
tsv
24
fastq
6
txt
2
bed bed3+
Organism
326
Homo sapiens
Biosample type
194
primary cell
75
tissue
47
in vitro differentiated cells
11
cell line
Organ
61
pancreas
19
lung
8
blood
8
bodily fluid
6
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
191
T1D
117
AMP
19
LungMap
Genome assembly (visualization)
193
hg19
135
GRCh38
Lab
AMP-T2D consortium
324
Klaus Kaestner, Upenn
298
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
7
inconsistent ontology term
lab.title!
AMP-T2D consortium
month_released!
May, 2020
BIOSAMPLE
ASSAY
327 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
MeRIP-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
51
1
CD8-positive, alpha-beta T cell
33
2
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
tissue
islet of Langerhans
11
29
6
4
lung
10
9
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC_BH1
6
3
2
See all biosamples
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