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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
110
total RNA-seq
26
snATAC-seq
ATAC-seq
17
pCHi-C
9
single cell RNA-seq
Assay category
154
DNA binding
119
Transcription
26
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
230
May, 2021
45
May, 2020
19
April, 2020
16
January, 2021
February, 2023
6
May, 2022
Available data
215
bigWig
186
bam
114
bed narrowPeak
96
tsv
84
tagAlign
6
fastq
6
txt
2
bed bed3+
Organism
315
Homo sapiens
Biosample type
239
primary cell
42
in vitro differentiated cells
35
tissue
Organ
19
lung
15
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
213
T1D
84
AMP
19
LungMap
Genome assembly (visualization)
215
hg19
180
GRCh38
Lab
AMP-T2D consortium
297
Kyle Gaulton, UCSD
199
Klaus Kaestner, Upenn
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
5
inconsistent ontology term
lab.title!
AMP-T2D consortium
month_released!
February, 2023
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
316 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
single cell RNA-seq
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
37
5
tissue
lung
10
9
islet of Langerhans
6
4
pancreas
1
4
thymus
1
See all biosamples
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