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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
26
snATAC-seq
17
pCHi-C
12
total RNA-seq
9
single cell RNA-seq
Assay category
37
DNA binding
26
DNA accessibility
21
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
60
May, 2021
February, 2023
19
April, 2020
16
January, 2021
6
May, 2022
Available data
6
bam
6
fastq
6
txt
Organism
100
Homo sapiens
Biosample type
42
in vitro differentiated cells
35
tissue
24
primary cell
Organ
19
lung
15
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
49
AMP
33
T1D
19
LungMap
Genome assembly (visualization)
hg19
180
GRCh38
Lab
AMP-T2D consortium
245
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
82
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
21
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
month_released!
February, 2023
assembly!
hg19
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
snATAC-seq
pCHi-C
total RNA-seq
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
37
5
tissue
lung
10
9
islet of Langerhans
4
6
pancreas
4
1
thymus
1
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
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