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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
total RNA-seq
26
snATAC-seq
18
ATAC-seq
9
single cell RNA-seq
Assay category
60
Transcription
44
DNA accessibility
Date released
May, 2021
45
May, 2020
24
May, 2022
February, 2023
19
April, 2020
16
January, 2021
Available data
69
bam
45
bigWig
45
tsv
24
fastq
18
bed narrowPeak
6
txt
Organism
103
Homo sapiens
Biosample type
53
primary cell
51
tissue
Organ
32
pancreas
19
lung
8
blood
8
bodily fluid
Project
61
T1D
24
AMP
19
LungMap
Genome assembly (visualization)
63
hg19
45
GRCh38
Lab
AMP-T2D consortium
248
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
85
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
month_released!
February, 2023
May, 2021
BIOSAMPLE
ASSAY
104 results
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total RNA-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
primary cell
peripheral blood mononuclear cell
8
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
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tissue
islet of Langerhans
6
4
18
lung
10
9
pancreas
4
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