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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
115
total RNA-seq
ATAC-seq
28
snATAC-seq
17
pCHi-C
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
Assay category
154
DNA binding
124
Transcription
28
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
230
May, 2021
45
May, 2020
19
April, 2020
16
January, 2021
12
February, 2023
6
May, 2022
2
August, 2021
Available data
215
bigWig
186
bam
114
bed narrowPeak
96
tsv
84
tagAlign
6
fastq
6
txt
4
bed bed3+
Organism
329
Homo sapiens
Biosample type
239
primary cell
44
in vitro differentiated cells
42
tissue
5
cell line
Organ
22
pancreas
19
lung
8
blood
8
bodily fluid
3
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
225
T1D
86
AMP
19
LungMap
Genome assembly (visualization)
217
hg19
180
GRCh38
Lab
3569
AMP-T2D consortium
309
Kyle Gaulton, UCSD
275
Klaus Kaestner, Upenn
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
5
inconsistent ontology term
lab.title!
Anna Gloyn, Oxford
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
330 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
37
5
adipocyte
1
osteoblast
1
tissue
lung
10
9
islet of Langerhans
11
6
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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