Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
377
ATAC-seq
212
DNase-seq
30
snATAC-seq
5
FAIRE-seq
Assay category
1813
DNA binding
1600
Transcription
624
DNA accessibility
50
DNA methylation
26
3D chromatin structure
Date released
187
June, 2019
102
February, 2023
100
May, 2020
34
May, 2021
33
October, 2019
26
November, 2019
22
February, 2021
19
May, 2022
16
January, 2021
14
September, 2018
11
August, 2017
10
April, 2020
10
August, 2021
10
November, 2018
8
July, 2019
7
October, 2017
5
September, 2017
4
March, 2020
3
January, 2018
2
November, 2020
1
August, 2022
Available data
404
bed narrowPeak
388
bam
314
bigWig
241
bigBed narrowPeak
209
bed bed3+
206
bed broadPeak
206
bigBed broadPeak
63
fastq
14
tsv
12
bed bed3
4
bed bedgraph
1
tar
1
txt
Organism
623
Homo sapiens
Biosample type
364
tissue
191
primary cell
38
in vitro differentiated cells
31
cell line
Organ
119
pancreas
82
kidney
77
heart
74
epithelium
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
32
connective tissue
32
eye
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
9
liver
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
585
AMP
29
T1D
10
LungMap
Genome assembly (visualization)
425
hg19
353
GRCh38
Lab
562
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
45
inconsistent ontology term
2
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
624 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
63
1
7
1
coronary artery
36
2
heart
18
retina
15
3
muscle of arm
17
+ See 60 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
peripheral blood mononuclear cell
8
+ See 57 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
7
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
embryonic stem cell
5
+ See 4 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
See all biosamples
Download