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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
total RNA-seq
30
ATAC-seq
28
snATAC-seq
18
ChIP-seq
9
single cell RNA-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
1
whole genome sequencing assay
Assay category
75
Transcription
58
DNA accessibility
18
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
May, 2021
45
May, 2020
36
August, 2021
24
May, 2022
23
February, 2023
19
April, 2020
16
January, 2021
2
March, 2019
Available data
69
bam
59
bigWig
55
tsv
32
bed narrowPeak
24
fastq
6
txt
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
164
Homo sapiens
Biosample type
73
tissue
53
primary cell
39
cell line
Organ
54
pancreas
31
liver
19
lung
8
blood
8
bodily fluid
2
kidney
Project
84
T1D
62
AMP
19
LungMap
Genome assembly (visualization)
80
hg19
46
GRCh38
Lab
3748
AMP-T2D consortium
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
108
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
month_released!
May, 2021
BIOSAMPLE
ASSAY
165 results
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total RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
whole genome sequencing assay
tissue
islet of Langerhans
12
30
6
2
lung
10
9
pancreas
4
primary cell
peripheral blood mononuclear cell
8
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 21 more…
cell line
HepG2
9
18
2
1
1
EndoC_BH1
3
2
HEK293T
2
Synthesized DNA
1
See all biosamples
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