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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
125
total RNA-seq
35
ATAC-seq
28
snATAC-seq
16
pCHi-C
9
single cell RNA-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
1
whole genome sequencing assay
Assay category
172
DNA binding
134
Transcription
63
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
137
histone
137
histone modification
75
broad histone mark
62
narrow histone mark
23
transcription factor
12
control
6
RNA binding protein
Date released
234
May, 2021
45
May, 2020
36
August, 2021
24
May, 2022
23
February, 2023
19
April, 2020
16
January, 2021
2
March, 2019
Available data
234
bigWig
204
bam
146
bed narrowPeak
106
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
398
Homo sapiens
Biosample type
239
primary cell
74
tissue
47
in vitro differentiated cells
39
cell line
Organ
55
pancreas
31
liver
19
lung
8
blood
8
bodily fluid
2
kidney
1
bone element
1
bone marrow
1
connective tissue
thymus
Project
235
T1D
145
AMP
19
LungMap
Genome assembly (visualization)
255
hg19
181
GRCh38
Lab
3911
AMP-T2D consortium
342
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
organ_slims!
thymus
BIOSAMPLE
ASSAY
399 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
whole genome sequencing assay
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
12
30
6
2
lung
10
9
pancreas
1
4
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
HepG2
18
9
2
1
1
EndoC_BH1
3
2
HEK293T
2
Synthesized DNA
1
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