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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
total RNA-seq
94
single cell RNA-seq
47
WGBS
20
ChIP-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
301
Transcription
DNA accessibility
47
DNA methylation
20
DNA binding
3
3D chromatin structure
Target of assay
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
96
May, 2021
86
February, 2023
80
May, 2022
56
September, 2020
45
May, 2020
18
February, 2021
9
April, 2020
3
October, 2022
Available data
138
fastq
102
bam
102
tsv
101
bigWig
93
zippedFastqFolder
6
txt
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
Organism
393
Homo sapiens
Biosample type
344
primary cell
22
in vitro differentiated cells
22
tissue
5
cell line
Organ
115
pancreas
103
epithelium
9
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
227
HPAP
123
T1D
34
AMP
9
LungMap
Genome assembly (visualization)
104
hg19
96
GRCh38
Lab
2506
AMP-T2D consortium
227
Klaus Kaestner, Upenn
157
Kyle Gaulton, UCSD
61
Katalin Susztak, Upenn
47
KPMP
34
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
5
inconsistent ontology term
3
audit script error
assay_slims!
DNA accessibility
target.investigated_as!
histone
BIOSAMPLE
ASSAY
393 results
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total RNA-seq
single cell RNA-seq
WGBS
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
Langerhans cell
85
pancreatic alpha cell
42
31
1
monocyte
53
1
exocrine cell
39
pancreatic beta cell
11
16
1
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in vitro differentiated cells
embryonic stem cell
5
17
tissue
islet of Langerhans
11
lung
9
pancreas
1
thymus
1
cell line
EndoC_BH1
3
2
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