Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
total RNA-seq
94
single cell RNA-seq
47
WGBS
20
ChIP-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
299
Transcription
DNA accessibility
47
DNA methylation
20
DNA binding
3
3D chromatin structure
Target of assay
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
94
May, 2021
86
February, 2023
80
May, 2022
56
September, 2020
45
May, 2020
18
February, 2021
9
April, 2020
3
October, 2022
Available data
138
fastq
102
bam
102
tsv
101
bigWig
93
zippedFastqFolder
6
txt
3
bedpe bed3+
3
cool
3
hic
bed bed3+
Organism
391
Homo sapiens
Biosample type
342
primary cell
22
in vitro differentiated cells
22
tissue
5
cell line
Organ
115
pancreas
103
epithelium
9
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
227
HPAP
123
T1D
32
AMP
9
LungMap
Genome assembly (visualization)
102
hg19
96
GRCh38
Lab
2471
AMP-T2D consortium
227
Klaus Kaestner, Upenn
155
Kyle Gaulton, UCSD
61
Katalin Susztak, Upenn
47
KPMP
34
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
1
ITG
Audit category:
5
inconsistent ontology term
3
audit script error
assay_slims!
DNA accessibility
target.investigated_as!
histone
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
391 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
WGBS
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
Langerhans cell
85
pancreatic alpha cell
42
31
1
monocyte
53
1
exocrine cell
39
pancreatic beta cell
11
16
1
+ See 35 more…
in vitro differentiated cells
embryonic stem cell
5
17
tissue
islet of Langerhans
11
lung
9
pancreas
1
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
Download