Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
total RNA-seq
94
single cell RNA-seq
72
ATAC-seq
70
ChIP-seq
58
snATAC-seq
47
WGBS
3
Hi-C
Assay category
200
Transcription
130
DNA accessibility
70
DNA binding
47
DNA methylation
3
3D chromatin structure
Target of assay
50
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
158
May, 2022
83
May, 2021
76
February, 2023
59
September, 2020
45
February, 2021
19
April, 2020
7
August, 2020
3
October, 2022
Available data
193
fastq
153
zippedFastqFolder
50
bigWig
48
bed narrowPeak
24
bam
6
tsv
6
txt
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
Organism
449
Homo sapiens
Biosample type
359
primary cell
47
in vitro differentiated cells
44
tissue
Organ
177
pancreas
152
epithelium
19
lung
Project
324
HPAP
T1D
107
AMP
19
LungMap
Genome assembly (visualization)
61
hg19
10
GRCh38
Lab
3904
AMP-T2D consortium
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
107
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
award.project!
T1D
BIOSAMPLE
ASSAY
450 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
+ See 1 more…
in vitro differentiated cells
embryonic stem cell
5
5
37
tissue
islet of Langerhans
6
18
lung
9
10
pancreas
1
See all biosamples
Download