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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
98
total RNA-seq
15
ATAC-seq
Assay category
117
DNA binding
98
Transcription
15
DNA accessibility
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
175
May, 2021
45
May, 2020
7
August, 2020
3
September, 2020
Available data
230
bigWig
204
bam
193
fastq
153
zippedFastqFolder
132
bed narrowPeak
102
tsv
84
tagAlign
6
txt
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
Organism
230
Homo sapiens
Biosample type
225
primary cell
5
in vitro differentiated cells
Organ
10
epithelium
10
pancreas
Project
180
T1D
40
AMP
10
HPAP
Genome assembly (visualization)
220
hg19
190
GRCh38
Lab
2859
AMP-T2D consortium
220
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
10
Klaus Kaestner, Upenn
5
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
0
Xin Sun, UCSD
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
230 results
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ChIP-seq
total RNA-seq
ATAC-seq
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
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in vitro differentiated cells
embryonic stem cell
5
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