Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ATAC-seq
154
ChIP-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
240
DNA accessibility
154
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
176
May, 2021
119
May, 2022
71
August, 2021
33
February, 2021
18
February, 2023
16
January, 2021
11
May, 2023
10
April, 2020
7
August, 2020
3
October, 2022
3
September, 2020
Available data
196
bed narrowPeak
132
bigWig
102
bam
101
zippedFastqFolder
84
tagAlign
64
xls
61
fastq
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
466
Homo sapiens
Biosample type
288
primary cell
132
tissue
42
in vitro differentiated cells
5
cell line
Organ
138
pancreas
99
epithelium
82
kidney
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
175
AMP
147
HPAP
135
T1D
10
LungMap
Genome assembly (visualization)
169
GRCh38
144
hg19
Lab
2436
AMP-T2D consortium
228
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
BIOSAMPLE
ASSAY
467 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
pancreatic alpha cell
29
31
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
1
pancreatic beta cell
16
16
1
+ See 15 more…
tissue
kidney
75
6
1
islet of Langerhans
29
6
lung
10
pancreas
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
37
cell line
EndoC_BH1
3
2
See all biosamples
Download