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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
256
total RNA-seq
154
ChIP-seq
119
ATAC-seq
61
snATAC-seq
53
single cell RNA-seq
17
pCHi-C
6
WGBS
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
309
Transcription
180
DNA accessibility
154
DNA binding
6
DNA methylation
4
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
128
August, 2021
99
February, 2023
45
February, 2021
45
May, 2020
40
September, 2020
24
May, 2022
19
April, 2020
16
January, 2021
14
May, 2023
7
August, 2020
3
October, 2022
Available data
230
bigWig
204
bam
196
bed narrowPeak
193
fastq
zippedFastqFolder
102
tsv
84
tagAlign
64
xls
63
txt
4
hic
3
bedpe bed3+
3
cool
2
bed bed3+
Organism
674
Homo sapiens
Biosample type
410
primary cell
213
tissue
47
in vitro differentiated cells
5
cell line
Organ
142
kidney
123
pancreas
72
epithelium
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
249
AMP
236
T1D
171
HPAP
19
LungMap
Genome assembly (visualization)
265
GRCh38
242
hg19
Lab
3912
AMP-T2D consortium
343
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
5
inconsistent ontology term
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
675 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
pCHi-C
WGBS
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
1
Langerhans cell
27
33
pancreatic alpha cell
42
7
6
1
exocrine cell
39
CD8-positive, alpha-beta T cell
4
33
1
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tissue
kidney
49
75
6
11
1
islet of Langerhans
11
29
6
lung
10
9
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
37
5
cell line
EndoC_BH1
3
2
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