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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
126
total RNA-seq
94
single cell RNA-seq
74
snATAC-seq
72
ATAC-seq
47
WGBS
17
pCHi-C
3
Hi-C
Assay category
220
Transcription
154
DNA binding
146
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
158
May, 2022
February, 2023
59
September, 2020
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
3
October, 2022
Available data
230
bigWig
204
bam
153
zippedFastqFolder
132
bed narrowPeak
117
fastq
102
tsv
84
tagAlign
6
txt
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
Organism
586
Homo sapiens
Biosample type
487
primary cell
53
tissue
47
in vitro differentiated cells
Organ
148
pancreas
115
epithelium
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
248
HPAP
213
T1D
107
AMP
19
LungMap
Genome assembly (visualization)
241
hg19
190
GRCh38
Lab
3809
AMP-T2D consortium
320
Kyle Gaulton, UCSD
248
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
5
inconsistent ontology term
month_released!
February, 2023
BIOSAMPLE
ASSAY
587 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
primary cell
monocyte
84
53
1
Langerhans cell
85
48
pancreatic alpha cell
15
29
31
1
CD8-positive, alpha-beta T cell
33
4
1
pancreatic beta cell
1
16
16
1
+ See 35 more…
tissue
islet of Langerhans
6
4
18
lung
9
10
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
5
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