Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
total RNA-seq
94
ChIP-seq
94
single cell RNA-seq
83
ATAC-seq
76
snATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
301
Transcription
159
DNA accessibility
94
DNA binding
47
DNA methylation
3
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
175
May, 2021
158
May, 2022
99
February, 2023
59
September, 2020
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
3
October, 2022
Available data
193
fastq
180
bigWig
164
bam
153
zippedFastqFolder
102
tsv
82
bed narrowPeak
44
tagAlign
6
txt
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
Organism
625
Homo sapiens
Biosample type
513
primary cell
71
tissue
37
in vitro differentiated cells
5
cell line
Organ
203
pancreas
152
epithelium
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
324
HPAP
196
T1D
87
AMP
19
LungMap
Genome assembly (visualization)
191
hg19
150
GRCh38
Lab
3475
AMP-T2D consortium
324
Klaus Kaestner, Upenn
283
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
36
Bing Ren, UCSD
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
5
inconsistent ontology term
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
626 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
monocyte
53
44
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 36 more…
tissue
islet of Langerhans
11
29
6
lung
9
10
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
27
5
cell line
EndoC_BH1
3
2
See all biosamples
Download