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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
total RNA-seq
35
ATAC-seq
28
snATAC-seq
17
pCHi-C
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
63
DNA accessibility
9
Transcription
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
176
May, 2021
19
April, 2020
18
February, 2023
18
May, 2022
16
January, 2021
1
March, 2019
Available data
132
bed narrowPeak
122
bigWig
102
bam
84
tagAlign
18
fastq
Organism
247
Homo sapiens
Biosample type
141
primary cell
60
tissue
42
in vitro differentiated cells
5
cell line
Organ
40
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
135
T1D
94
AMP
19
LungMap
Genome assembly (visualization)
140
hg19
84
GRCh38
Lab
2665
AMP-T2D consortium
232
Klaus Kaestner, Upenn
228
Kyle Gaulton, UCSD
93
Katalin Susztak, Upenn
47
KPMP
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
248 results
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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
CD8-positive, alpha-beta T cell
33
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
tissue
islet of Langerhans
30
6
lung
10
9
pancreas
4
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
cell line
EndoC_BH1
3
2
See all biosamples
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