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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
119
total RNA-seq
110
ATAC-seq
34
snATAC-seq
20
single cell RNA-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
Assay category
154
DNA binding
144
DNA accessibility
139
Transcription
1
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
128
August, 2021
May, 2020
24
May, 2022
23
February, 2023
19
April, 2020
16
January, 2021
14
May, 2023
1
March, 2019
Available data
196
bed narrowPeak
175
bigWig
159
bam
84
tagAlign
64
xls
63
txt
51
tsv
24
fastq
2
bed bed3+
1
hic
Organism
459
Homo sapiens
Biosample type
214
tissue
194
primary cell
47
in vitro differentiated cells
5
cell line
Organ
142
kidney
52
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
250
AMP
191
T1D
19
LungMap
Genome assembly (visualization)
210
GRCh38
194
hg19
Lab
3616
AMP-T2D consortium
324
Klaus Kaestner, Upenn
298
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
May, 2020
BIOSAMPLE
ASSAY
460 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
tissue
kidney
49
75
6
11
1
islet of Langerhans
11
30
6
lung
10
9
pancreas
1
4
thymus
1
primary cell
monocyte
84
51
1
CD8-positive, alpha-beta T cell
33
2
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC_BH1
3
2
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